I Encountered a problem that maybe one of you can help me resolve.
I got Mass Spec results from a sample that I prepared couple of days ago.
I found out that it matched my anticipation. I know that there is a possibility to find out using some kind of software that maybe you know about where the matches are in the whole protein.
I looked into the Swiss expasy web site but was not able to find something that would help me.
Now for the main thing, what am I looking for:
I got 24 peptides that match 13% of CFTR a trans-membrane protein channel.
I am interested to find out using some kind of an alignment software what areas the peptides are covering. I did it manualy using an old software but I guess there is a much easier way to do it, do you know one?
Thank you in advance
Aligment of peptides with protein