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Genome Analyzer II - Raw Data Analysis

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gopal_joshii

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 Send a personal messsage to gopal_joshii Reply with a quote from this post Go to the top of the page

Hi All,

I am working on Genome Analysis Pipeline Software 0.03. I have got DNA fragments in realingn.txt files. Please suggest me a best tool for the assembly of these fragments and also provide me a protocol filter out raw data.
Thanking you.
With regards.

Gopal Joshi

.........................
Research Scholar, Department of Plant Molecular Biology,South Campus University of Delhi, Delhi

Posted Sep 30, 2008, 2:19 AM
ryan_m

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I'm happy to advise you, but I'll need to know more about what you are working on. What species is the sample from? Is it DNA or RNA? Answers to these questions could drastically change how you go about with your analysis.

Ryan

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Posted Sep 30, 2008, 8:50 AM
gopal_joshii

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Hi,
Thanks for your valuable response.
These are c-DNA Sequence of PhiX Genome sequenced by Genome Analyzer 2.

.........................
Research Scholar, Department of Plant Molecular Biology,South Campus University of Delhi, Delhi

Posted Nov 12, 2008, 23:25 PM
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