I have a problem with RNA stability in my reactions: pH=7.4 72 degrees Celsium, 1 h. I see my tRNA degradation after this incubation, when no degradation is observed after 20 min at room temp in the same buffer.I know that RNA is susceptable to temperature and alkali, but I can not find any concrete information, graphs of RNA stability versus temperature and pH for instance, that could help to adjust my conditions.I will appreceate any comments, suggestions, your personal experience and links. Thank you.
cDNA synthesis reactions are usually about 55-60 degrees and there's no problem with stability there. They do often contain an RNase Inhibitor though - could you include this?
The RNase inhibitor (from Fermentas) is said to be active up to 55 degrees, so I doubt if it's helpful at 70-72.
I don't know what reaction you're doing at 72 degrees but if it involves a polymerase, it will probably work well at 60 too.
It's an RNA methylation reaction with enzymes from hypertermophilic archaea. The methylation activity drops at lower temperatures.
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