We're wanting to run some samples on the agilent array CGH platform to confirm some copy number variations we've seen on another platform. The issue is, we currently only have whole genome amplified DNA for our family of interest since the orginal stocks have been heavily used. We are of course trying to get more, but we were wondering if anyone had any experience of using whole genome amplified samples on either the agilent array CGH, or on Taqman, as this is another option.

Any suggestions?