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qpwoei4756
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Topic Started by qpwoei4756
on 1/31/2012 11:30 AM   
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Hello,

I am purifying a six-His tagged 50kDa hnRNP K protein from E coli cells using IMAC with Cobalt TALON resin. I am trying to send the proteins for crystallography and it requires a good quality of sample. My problem is that smaller bands are visible on the gel and I don't know how to get rid of them.  
What might the problem and how can I fix it?
Can using a whole range of gradients (50, 60, 70, 80, 90, 100, 110mM, etc.), or adding imidazole to the wash buffer improve the specificity of the resin-bound proteins

Attached is one sample of my purification on an SDS-PAGE gel. This was done after growing E coli on 1 liter of liquid media. From left to right: protein standards, lysis buffer mix, resin flow-through, wash 1, wash 2, wash 3, 50mM imidazole, 100mM, 200mM, 300mM.
Please Note that the wash buffer didn't elute out anything, and 100, 200, 300mM on the right side has a thick band with smaller contaminating proteins. I tried higher concentration of tris-HCl (but not NaCl)on the wash buffer but it did not improve the results for the washing step.  

Thank you so much and appreciate your help!

qpwoei4756



P.S. Here is a short hand note of my reagents/protocol:

lysis buffer: 50MmTris-HCl (ph7.5), 10% glycerol, 0.5M NaCl; 
Washing buffer: 50MmTris-HCl (ph7.5), 10% glycerol, 0.3M NaCl; 
Elution buffer: 50MmTris-HCl (ph7.5), 10% glycerol, 0.3M NaCl, made 20ml each then add imidazole to final concentration of 50mM, 100mM, 200mM, 300mM to each.
Used 1L LB+drug to grow E coli up to OD600 of 0.6. Then induced the recombinant protein on a plasmid vector using IPTG for 4 hours 37C. Centrifuged and collected cell pellets. Went to 4C room, added lysis buffer with PMSF, sonicated, centrifuged, obtained supernatants, poured it onto cobalt-resin, washed three times, and collected using imidazole elution buffer. SDS gel



Attached file: 12-21-11 small.jpg
12-21-11 small.jpg

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Pippuri
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Posted By Pippuri
on 1/31/2012 13:04 PM   
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Hi qpwoei4756,

I suggest you to pass your protein through a second column, preferentially a size-exclusion chromatography. It should give you a much cleaner sample.

Good luck.



qpwoei4756
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Posted By qpwoei4756
on 2/2/2012 15:12 PM   
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 Thanks pippuri,

 
Before doing size exclusion to filter out the smaller proteins, I can try to optimize my extraction conditions. I just found out that the PMSF protease inhibitor was water-sensitive and I've been storing it in water this whole time!:( Maybe that's the problem. 
I will also use a gradient of elution buffer in a whole range of imidazoles, like 50, 75, 100, 150, 200, 250, 300, instead of 50, 100, 200, 300mM. I'm also going to try to pre-treat the wash buffer with 5mM imidazole to elute out endogenous proteins that have the ability to bind my resins. But, SEC will be my last resort. 
 
Cheers,
 
qpwoei4756



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