Genome Analyzer II - Raw Data Analysis

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gopal_joshii
gopal_joshii's picture
Genome Analyzer II - Raw Data Analysis

Hi All,

I am working on Genome Analysis Pipeline Software 0.03. I have got DNA fragments in realingn.txt files. Please suggest me a best tool for the assembly of these fragments and also provide me a protocol filter out raw data.
Thanking you.
With regards.

Gopal Joshi

ryan_m
ryan_m's picture
I'm happy to advise you, but

I'm happy to advise you, but I'll need to know more about what you are working on. What species is the sample from? Is it DNA or RNA? Answers to these questions could drastically change how you go about with your analysis.

Ryan

gopal_joshii
gopal_joshii's picture
Hi,

Hi,
Thanks for your valuable response.
These are c-DNA Sequence of PhiX Genome sequenced by Genome Analyzer 2.