I'm PhD setudent , working in DNA seq. in social networks.
at first, I would like to know which applications that have to use pairwise seq. and the other that have to use multiple seq. alignment.
i.e. what is thing by which we decide work with pairwise or multiple seq. alignment?
the other query: regarding pairwise seq. ,it is disocvering the similarity sequences in dataset.
my dataset consist of records , each record has sum of events.
thses records are similar in events .
These records are not similar in sequence of events but are similar in disributed events along each record.
can Pairwise discover that similarity or not?
I do apprecite any reply.