protein structure alignment in 3D

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mitxyz
mitxyz's picture
protein structure alignment in 3D

Hello,
I am looking for an alternative program to Secondary-structure matching (SSM) (
http://www.ccp4.ac.uk/ccp4bin/viewcvs/ccp4/lib/ssm/ ) to computes protein structure alignment in three dimensions.

It would be great if the alternative program is implement in C or Java.

Best regards,

genius_nitin
genius_nitin's picture
did you try NCBI's VAST

did you try NCBI's VAST program ?