I have genotyped some loci in 5 populations, now i want to calculate the fst of these loci among these populations, how can i do this?
which software can help me? i know arlequin can calculate the fst of the haplotype, can it do the fst analysis of one locus?
Ask for your help about the Fst
30 October 2007
#1
Ask for your help about the Fst
Hi there,
Could you clarify what you mean by fst , maybe provide a link to describe what it is?
thanks
I want to check the difference among these populations by Fst, but i do not know how to calculate the fst and which software i can use.
Can you please clarify what fst is (or stands for) for the sake of the users?
Thanks
By comparing the frequency of an allele between populations, the fst assesses the differenc between these populations.
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Is there nobody who can help me?
Have you given the programs here at UMass a try ?
If you have the data and the equation, why not try writing yourself a little script to calculate it?