Ask for your help about the Fst

7 posts / 0 new

30 October 2007

josephsunhm

I have genotyped some loci in 5 populations, now i want to calculate the fst of these loci among these populations, how can i do this?
which software can help me? i know arlequin can calculate the fst of the haplotype, can it do the fst analysis of one locus?

Tue, 10/30/2007 - 16:01

bgood

Hi there,

Could you clarify what you mean by fst , maybe provide a link to describe what it is?

thanks

Wed, 10/31/2007 - 00:08

josephsunhm

I want to check the

I want to check the difference among these populations by Fst, but i do not know how to calculate the fst and which software i can use.

Wed, 10/31/2007 - 02:23

ryan_m

Can you please clarify what

Can you please clarify what fst is (or stands for) for the sake of the users?

Thanks

Wed, 10/31/2007 - 02:29

josephsunhm

By comparing the frequency of

By comparing the frequency of an allele between populations, the fst assesses the differenc between these populations.
null

Mon, 11/05/2007 - 03:09

josephsunhm

Is there nobody who can help

Is there nobody who can help me?

Mon, 11/05/2007 - 16:44

bgood

Have you given the programs

Have you given the programs here at UMass a try ?

If you have the data and the equation, why not try writing yourself a little script to calculate it?

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Ask for your help about the Fst